I've got PD version 6.
NTFS has 3 areas that PerfectDisk has to defragment offline:
Defragmenting System Files & Directories
Certain files cannot be defragmented online due to operating system constraints. The constraints vary by operating system (Windows 2000 and Windows 2003/XP) and by file system format (FAT/FAT32 or NTFS). For a more detailed description see Offline files for your operating system). Generally the three types of files which may need to be defragmented offline are:
Pagefile - This is your virtual memory file (Pagefile.sys). This file is exclusively locked by the operating system and can only be placed by a boot time defragmentation pass.
System Files - These are operating system files such as the Master File Table, the hibernate file and other metadata files. Depending on the operating and file systems some of these files can be defragmented online and some offline.
Directories - On NTFS formatted drives directories are treated as online files. On FAT/FAT32 formatted drives directories are treated as offline files.
I'm assuming you're seeing the [link|http://support.microsoft.com/kb/174619|MFT] and/or the [link|http://www.ntfs.com/ntfs_optimization.htm|MFT (Expansion) Zone].
HTH a bit.
Cheers,
Scott.