They might have used a CCD camera for the picture. Also, the simulations seem to put the planets in the right place, according to the reports, so I think it's possible. Plus, I'm sure the photographers are aware of reflection issues and do what they can to avoid them.
The exposure issues are real, but I don't think they're insurmountable. E.g. the Pat Totten photo in your link. A photo of the Earth would have less light intensity than the photo of the corona making it less of an issue.
Cheers,
Scott.