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New No idea, just a wild guess
Do subsequent inserts take even longer? Maybe it's doing a full table scan for some reason - but even then that shouldn't take 40 seconds. But the only thing I know about MySQL is how to spell it (and I may even have the capitalisation all wrong) so who knows.

Does it have Oracle-esque 'Explain Plan' functionality that may give a clue?
Two out of three people wonder where the other one is.
New Full table scan is faster
I already tested doing a search on the (non-indexed) blob column the data is in. (Remember there are fewer than 40 rows so far.) Even that search takes less time than the insert, so it's not a scan.
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Implicitly condoning stupidity since 2001.
     Why would a database insert take >40 seconds? - (drewk) - (7)
         No idea, just a wild guess - (Meerkat) - (1)
             Full table scan is faster - (drewk)
         Are there indexes on other columns? - (ben_tilly) - (4)
             Here's the table - (drewk) - (3)
                 What are the indexes though? -NT - (admin) - (2)
                     Called KEY in mysql - (drewk) - (1)
                         Oh, heh. Never mind. - (admin)

The rest of the nutzo stuff du jour.
63 ms